SNP Profiles of PNG 197 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	CC	GG	AG	CC	CC	CT	GG	CT	CC	CT	AA
1._GC-01-090-5-07	AA	AA	CT	CC	GG	AG	CC	CC	CT	GG	CT	CC	CT	AA
2._GC-01-090-5-07	AA	AA	CT	CC	GG	AG	CC	CC	CT	GG	CT	CC	CT	AA
3._GC-01-090-5-07	AA	AA	CT	CC	GG	AG	CC	CC	CT	GG	CT	CC	CT	AA
4._GC-01-090-5-07	_	AA	CT	CC	GG	AG	CC	CC	CT	GG	CT	CC	CT	AA
5._PNG_197	AA	AA	CT	CC	_	_	_	_	CT	GG	_	CC	_	_
6._PNG_197	AA	AA	CT	CC	_	_	_	_	CT	GG	_	CC	_	_
7._PNG_197	AA	AA	CT	CC	_	_	_	_	CT	GG	_	CC	_	_
8._PNG_197	AA	AA	CT	CC	_	_	_	_	CT	GG	_	CC	_	_
9._PNG_197	_	AA	CT	CC	_	_	_	_	CT	GG	_	CC	_	_
10._RUQ_1291	_	_	CT	CC	_	_	TT	_	CT	_	CT	CC	_	_
11._RUQ_1291	AA	AC	CT	CC	_	_	_	_	CT	AG	_	CC	_	_
12._RUQ_1291	_	_	_	CC	_	_	TT	_	_	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	GG	CG	GG	CC	GG	TT	GG	TT	AT	CC	CC	AA
1._GC-01-090-5-07	AC	AA	GG	CG	GG	CC	GG	TT	GG	TT	AT	CC	CC	AA
2._GC-01-090-5-07	AC	AA	GG	CG	GG	CC	GG	TT	GG	TT	AT	CC	CC	AA
3._GC-01-090-5-07	AC	AA	GG	CG	GG	CC	GG	TT	GG	TT	AT	CC	CC	AA
4._GC-01-090-5-07	AC	AA	GG	CG	GG	CC	GG	TT	GG	TT	AT	CC	CC	AA
5._PNG_197	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
6._PNG_197	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
7._PNG_197	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
8._PNG_197	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
9._PNG_197	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
10._RUQ_1291	_	_	_	CG	_	_	_	_	GG	_	AT	CC	CC	_
11._RUQ_1291	_	AA	_	_	GG	_	_	_	_	TT	AT	_	CC	AA
12._RUQ_1291	_	AA	TT	_	_	_	_	_	_	_	_	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AG	CG	CC	AA	GT	GG	GT	AG	CT	AG	CC	TT
1._GC-01-090-5-07	TT	GG	AG	CG	CC	AA	GT	GG	GT	AG	CT	AG	CC	TT
2._GC-01-090-5-07	TT	GG	AG	CG	CC	AA	GT	GG	GT	AG	CT	AG	CC	TT
3._GC-01-090-5-07	TT	GG	AG	CG	CC	AA	GT	GG	GT	AG	CT	AG	CC	TT
4._GC-01-090-5-07	TT	GG	AG	CG	CC	AA	GT	GG	GT	AG	CT	AG	CC	TT
5._PNG_197	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
6._PNG_197	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
7._PNG_197	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
8._PNG_197	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
9._PNG_197	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
10._RUQ_1291	_	_	AG	GG	CC	AA	GT	_	_	AG	CT	_	_	TT
11._RUQ_1291	_	_	_	CG	_	AA	GT	_	_	AG	_	_	_	_
12._RUQ_1291	_	_	_	CG	_	AA	_	_	_	_	CT	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AG	AG	AA	TT	AC	GG	GG	GT	TT	CC	CC	TT	GG
1._GC-01-090-5-07	CT	AG	AG	AA	TT	AC	GG	GG	GT	TT	CC	CC	TT	GG
2._GC-01-090-5-07	CT	AG	AG	AA	TT	AC	GG	GG	GT	TT	CC	CC	TT	GG
3._GC-01-090-5-07	CT	AG	AG	AA	TT	AC	GG	GG	GT	TT	CC	CC	TT	GG
4._GC-01-090-5-07	CT	AG	AG	AA	TT	AC	GG	GG	GT	TT	CC	CC	TT	GG
5._PNG_197	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
6._PNG_197	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
7._PNG_197	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
8._PNG_197	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
9._PNG_197	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
10._RUQ_1291	_	_	AG	_	_	_	_	_	_	TT	CC	_	TT	-
11._RUQ_1291	CT	_	_	_	_	_	_	_	_	_	CC	CC	_	_
12._RUQ_1291	_	_	AG	_	_	_	_	_	_	_	_	_	_	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CT	AC	GG	GG	AC	AG	TT	GT	GG	TT	CG	AA
1._GC-01-090-5-07	GG	CC	CT	AC	GG	GG	AC	AG	TT	GT	GG	TT	CG	AA
2._GC-01-090-5-07	GG	CC	CT	AC	GG	GG	AC	AG	TT	GT	GG	TT	CG	AA
3._GC-01-090-5-07	GG	CC	CT	AC	GG	GG	AC	AG	TT	GT	GG	TT	CG	AA
4._GC-01-090-5-07	GG	CC	CT	AC	GG	GG	AC	AG	TT	GT	GG	TT	CG	AA
5._PNG_197	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AA
6._PNG_197	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AA
7._PNG_197	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AA
8._PNG_197	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AA
9._PNG_197	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AA
10._RUQ_1291	GG	CC	CT	AC	_	GG	AC	AG	TT	GT	GG	_	_	_
11._RUQ_1291	GG	_	CT	AC	GG	_	AC	AG	TT	GT	_	_	_	AG
12._RUQ_1291	_	_	_	_	_	_	AC	AG	_	GT	GG	_	_	AG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CC	AG	CC	AC	AG	CC	CG	CC	AA	AA	CT	CC	CT
1._GC-01-090-5-07	TT	CC	AG	CC	AC	AG	CC	CG	CC	AA	AA	CT	CC	CT
2._GC-01-090-5-07	TT	CC	AG	CC	AC	AG	CC	CG	CC	AA	AA	CT	CC	CT
3._GC-01-090-5-07	TT	CC	AG	CC	AC	AG	CC	CG	CC	AA	AA	CT	CC	CT
4._GC-01-090-5-07	TT	CC	AG	CC	AC	AG	CC	CG	CC	AA	AA	CT	CC	CT
5._PNG_197	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
6._PNG_197	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
7._PNG_197	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
8._PNG_197	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
9._PNG_197	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
10._RUQ_1291	_	_	_	_	_	_	CC	CG	_	_	AA	CT	_	_
11._RUQ_1291	TT	_	_	_	_	_	CC	CG	_	_	_	CT	CC	CT
12._RUQ_1291	_	_	_	_	_	_	AC	CG	_	_	AA	_	_	CT

	85	86	87	88	89	90	91	92
_Input profile	TT	AA	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-090-5-07	TT	AA	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-090-5-07	TT	AA	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-090-5-07	TT	AA	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-090-5-07	TT	AA	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._PNG_197	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
6._PNG_197	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
7._PNG_197	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
8._PNG_197	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._PNG_197	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_1291	_	AA	TT	CT	GT	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_1291	_	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_1291	_	_	TT	_	GT	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PNG_197 GC-01-090-5-07

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

1._PNG_197 GC-01-090-5-07

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._PNG_197 GC-01-090-5-07

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._PNG_197 GC-01-090-5-07

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._PNG_197 GC-01-090-5-07

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._PNG_197

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1507 2

Dapeng Zhang, 2016

6._PNG_197

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1507 3

Dapeng Zhang, 2016

7._PNG_197

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1507 4

Dapeng Zhang, 2016

8._PNG_197

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1507 5

Dapeng Zhang, 2016

9._PNG_197

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1507 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._PNG_197 RUQ_1291

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PNG_197 RUQ_1291

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._PNG_197 RUQ_1291

85.7 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240